John Cunningham, MD

  • Chair of Pediatrics
    George M. Eisenberg Professor of Pediatrics
  • Clinical Interests: Adolescent and Young Adult Cancer Care, Blood Disorders, Childhood Leukemia, Hemoglobinopathies, Pediatric CAR TCell Therapy, Pediatric Hematology, Pediatric Oncology, Pediatric Stem Cell Transplant, Primary Immunodeficiency Disorders, Sickle Cell Disease
  • Research and Scholarly Interests: Erythropoiesis, Gene Regulatory Networks, Hematopoiesis, Hemoglobinopathies, Neural Crest, Sickle Cell Disease, Stem Cell Transplantation, Transcription Factors
  • Websites: Research Network Profile
  • Contact: jmcunningham@uchicago.edu
  • Graduate Program: Committee on Development, Regeneration, and Stem Cell Biology

My research focuses on the biology and therapy of hemoglobinopathies, the molecular mechanisms underpinning hematopoiesis and the development of the leukemia stem cell, and the transcriptional mechanisms operative during the development of vertebrate organisms. Research projects include characterization of the key factors modulating developmental erythropoiesis, identification of gene regulatory networks in the neural crest and in neuroblastoma, and the development of allogenic stem cell transplant approaches to sickle cell disease. We collaborate with colleagues in developmental biology, informatics, and cancer biology to ensure that we bring a comprehensive perspective to the fundamental question we seek to solve.

Clinical Hematology Branch, National Heart Lung and Blood Institute
National Institutes of Health, Bethesda, MD
- Hematology
1993

Royal Free Hospital School of Medicine
London, United Kingdom
- Wellcome Fellowship, Hematology
1991

Kings College London
United Kingdom
MSc - Biochemistry
1990

Mater Misericordiae Hospital
Dublin, Ireland
- Hematology Fellowship
1987

Royal College of Physicians
United Kingdom
Membership (MRCP) - Medicine
1986

St Laurences Hospital
Dublin, Ireland
- Residency
1985

University College Dublin
Ireland
MB BCh BAO - Medicine
1982

Copper Drives Remodeling of Metabolic State and Progression of Clear Cell Renal Cell Carcinoma.
Copper Drives Remodeling of Metabolic State and Progression of Clear Cell Renal Cell Carcinoma. Cancer Discov. 2025 Feb 07; 15(2):401-426.
PMID: 39476412

Tobacco smoking induces metabolic reprogramming of renal cell carcinoma.
Tobacco smoking induces metabolic reprogramming of renal cell carcinoma. J Clin Invest. 2021 01 04; 131(1).
PMID: 32970633

Translation control of the immune checkpoint in cancer and its therapeutic targeting.
Translation control of the immune checkpoint in cancer and its therapeutic targeting. Nat Med. 2019 02; 25(2):301-311.
PMID: 30643286

Outcomes following second allogeneic stem cell transplant for disease relapse after T cell depleted transplant correlate with remission status and remission duration after the first transplant.
Outcomes following second allogeneic stem cell transplant for disease relapse after T cell depleted transplant correlate with remission status and remission duration after the first transplant. Exp Hematol Oncol. 2019; 8:1.
PMID: 30622841

CisPi: a transcriptomic score for disclosing cis-acting disease-associated lincRNAs.
CisPi: a transcriptomic score for disclosing cis-acting disease-associated lincRNAs. Bioinformatics. 2018 09 01; 34(17):i664-i670.
PMID: 30423099

Development of a stress response therapy targeting aggressive prostate cancer.
Development of a stress response therapy targeting aggressive prostate cancer. Sci Transl Med. 2018 05 02; 10(439).
PMID: 29720449

Immune Reconstitution Following Autologous Stem Cell Transplantation in Patients with High-Risk Neuroblastoma at the Time of Immunotherapy.
Immune Reconstitution Following Autologous Stem Cell Transplantation in Patients with High-Risk Neuroblastoma at the Time of Immunotherapy. Biol Blood Marrow Transplant. 2018 03; 24(3):452-459.
PMID: 29191664

Incorporating genomic, transcriptomic and clinical data: a prognostic and stem cell-like MYC and PRC imbalance in high-risk neuroblastoma.
Incorporating genomic, transcriptomic and clinical data: a prognostic and stem cell-like MYC and PRC imbalance in high-risk neuroblastoma. BMC Syst Biol. 2017 Oct 03; 11(Suppl 5):92.
PMID: 28984200

Exosomes contribute to endothelial integrity and acute chest syndrome risk: Preliminary findings.
Exosomes contribute to endothelial integrity and acute chest syndrome risk: Preliminary findings. Pediatr Pulmonol. 2017 Nov; 52(11):1478-1485.
PMID: 28486752

A c-Myc-regulated stem cell-like signature in high-risk neuroblastoma: A systematic discovery (Target neuroblastoma ESC-like signature).
A c-Myc-regulated stem cell-like signature in high-risk neuroblastoma: A systematic discovery (Target neuroblastoma ESC-like signature). Sci Rep. 2017 03 03; 7(1):41.
PMID: 28246384

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Bucksbaum Senior Fellow
Bucksbaum Institute, University of Chicago
2017 - 2019

George M. Eisenberg Professor
University of Chicago
2017 - 2019

Pritzker Professor
University of Chicago
2015 - 2017

Fogarty Fellowship
National Institutes of Health
1991 - 1993

Wellcome Fellowship
Wellcome Trust
1988 - 1991